Shamrat Kumar Paul
Aletheia Blog
The Ultimate Guide to Running a Windows 11 Environment on Ubuntu with Winboat
A comprehensive walkthrough of installing Winboat, setting up system prerequisites, and troubleshooting common startup issues like the SUID sandbox error.... Read more →
How to Install VMD (Visual Molecular Dynamics) on Ubuntu 24.04
A complete step-by-step guide to installing VMD 1.9.4 Alpha on Ubuntu 24.04 Noble Numbat. Read more →
How to Enable Dark Mode for All Websites in Microsoft Edge on Linux
A quick guide on how to force dark mode on all websites using Edge's built-in experimental flags and extensions. Read more →
Troubleshooting High RAM Usage on Ubuntu: A Case Study
A quick walkthrough of how I diagnosed 13GB of RAM usage and cleared it down to 4GB by identifying hidden... Read more →
Rclone Google Drive Sync Guide: A Reliable Multi-Device Workflow
A comprehensive guide to managing Google Drive synchronization on Linux using rclone, including custom Client ID setup for stability. Read more →
GNOME System Customization: Achieving a Windows 11-Style Dock
A guide on how to customize the GNOME dock to look and feel like Windows 11 with centered icons and... Read more →
Remote Windows Access from Ubuntu: A Robust SSHFS & RDP Setup
How to seamlessly link an Ubuntu laptop to a Windows machine for high-performance research and file management. Read more →
MSA & Phylogeny
Multiple Sequence Alignment (MSA) and phylogenetic tree reconstruction are core tasks in bioinformatics. This guide outlines the workflow using tools... Read more →
R in WSL
Installing R on Windows Subsystem for Linux (WSL) allows you to leverage the statistical power of R within a Linux... Read more →
Simulation in python
This post demonstrates a simplified molecular dynamics (MD) simulation implemented in Python. We’ll explore the core components required to simulate... Read more →
Install Texlive on WSL
Markdown and LaTeX are both powerful tools for document creation. When combined with Visual Studio Code (VS Code) and Windows... Read more →
Install GROMACS on WSL
A quick summary of the commands required to install GROMACS on Windows Subsystem for Linux (WSL). Technical Summary Run the... Read more →
Install Jekyll on WSL
Introduction: Jekyll is a powerful static site generator that allows you to manage websites using plain text files. By using... Read more →
Install GROMACS on WSL
Install GROMACS on Windows Running GROMACS on Windows has never been easier thanks to the Windows Subsystem for Linux (WSL).... Read more →
Plot the *.xvg file
Plot the *.xvg file. GROMACS typically outputs data in the XVG file format. While tools like xmgrace (on Linux) or... Read more →
Install GROMACS 2021.2 on WSL
A step-by-step guide for installing GROMACS 2021.2 on Windows Subsystem for Linux (WSL). Prerequisites Before starting, ensure you have the... Read more →
Install Git bash on Windows 10
Committing code directly from a local disk to a GitHub repository is an essential skill for productivity. This guide covers... Read more →
Remmina - Remote Desktop Connection on Windows 10
A guide for setting up a Remmina Remote Desktop connection to access Windows 10 from Ubuntu 20.04 LTS. This post... Read more →
Install NGS on Ubuntu 20.04
A guide for installing Next-Generation Sequencing (NGS) tools on Ubuntu 20.04 LTS. This post documents the steps taken during my... Read more →
Install WSL2 on windows 10
A draft guide for activating WSL2 on Windows 10 (Version 20H2, OS Build 19042.746). This post serves as a notebook... Read more →
Powered by Jekyll and Minimal Light theme.