Shamrat Kumar Paul

@article{paul2025cdkl5, title={CDKL5 Deficiency Disorder: Revealing the Molecular Mechanism of Pathogenic Variants}, author={Paul, S. K. and Panday, S. K. and Boccuto, L. and Alexov, E.}, journal={International Journal of Molecular Sciences}, volume={26}, number={17}, pages={8399}, year={2025}, publisher={MDPI} }

@article{rimal2025further, title={Further Development of SAMPDI-3D: Machine Learning Method for Predicting Binding Free Energy Changes Caused by Mutations in Either Protein or DNA}, author={Rimal, P. and Paul, S. K. and Panday, S. K. and Alexov, E.}, journal={Genes}, volume={16}, number={1}, pages={101}, year={2025}, publisher={MDPI} }

@article{paul2025molecular_psmb8, title={Molecular dynamics simulation of wild and mutant proteasome subunit beta type 8 (PSMB8) protein: Implications for restoration of inflammation in experimental autoimmune encephalomyelitis pathogenesis}, author={Paul, S. K. and Saddam, M. and Tabassum, N. and Hasan, M.}, journal={Heliyon}, volume={11}, number={1}, pages={e41166}, year={2025}, publisher={Elsevier}, doi={10.1016/j.heliyon.2024.e41166} }

@article{PAUL2024S61, title={Exploring the diversity and function of the RTA1-like protein family in Aspergillus fumigatus}, author={Paul, S. K. and Dolan, S. and Murphy, M.}, journal={Journal of Cystic Fibrosis}, volume={23}, pages={S61}, year={2024}, note={Abstracts of the 2024 North American Cystic Fibrosis Conference}, doi={10.1016/S1569-1993(24)00958-5}, url={https://www.sciencedirect.com/science/article/pii/S1569199324009585} }

@article{saddam2024emerging, title={Emerging biomarkers and potential therapeutics of the BCL-2 protein family: the apoptotic and anti-apoptotic context}, author={Saddam, M. and Paul, S. K. and Habib, M. A. and Fahim, M. A. and Mimi, A. and Islam, S. and Paul, B. and Helal, M. M. U.}, journal={Egyptian Journal of Medical Human Genetics}, volume={25}, number={1}, pages={12}, year={2024}, publisher={Springer} }

@article{paul2023miliary, title={Miliary tuberculosis in an immune-competent Bangladeshi man—A case report}, author={Paul, S. K. and Ahmed, S. and Chakrabortty, R. and Paul, S. K. and Rahman, M. A.}, journal={Clinical Case Reports}, volume={11}, number={6}, pages={e7516}, year={2023}, publisher={Wiley} }

@article{paul2023computational, title={A computational investigation on Rho-related GTP-binding protein RhoB through molecular modeling and molecular dynamics simulation study}, author={Paul, S. K. and Metu, C. L. N. and Sutihar, S. K. and Saddam, M. and Paul, B. and Kabir, M. L. and Helal, M. M. U.}, journal={bioRxiv}, year={2023}, publisher={Cold Spring Harbor Laboratory} }

@article{paul2022molecular, title={Molecular modeling, molecular dynamics simulation, and essential dynamics analysis of grancalcin: An upregulated biomarker in experimental autoimmune encephalomyelitis mice}, author={Paul, S. K. and Saddam, M. and Rahaman, K. A. and Choi, J. G. and Lee, S. S. and Hasan, M.}, journal={Heliyon}, volume={8}, number={10}, pages={e11232}, year={2022}, publisher={Elsevier} }

@article{hasan2022natural, title={Natural Product-Based Potential Therapeutic Interventions of Pulmonary Fibrosis}, author={Hasan, M. and Paul, N. C. and Paul, S. K. and Saikat, A. S. M. and Akter, H. and Mandal, M. and Lee, S. S.}, journal={Molecules}, volume={27}, number={5}, pages={1481}, year={2022}, publisher={MDPI} }

@article{curroncol28060417, title={Potential Role of CCN Proteins in Breast Cancer: Therapeutic Advances and Perspectives}, author={Ahmed, Kazi Ahsan and Hasib, Tasnin Al and Paul, Shamrat Kumar and Saddam, Md. and Mimi, Afsana and Saikat, Abu Saim Mohammad and Faruque, Hasan Al and Rahman, Md. Ataur and Uddin, Md. Jamal and Kim, Bonglee}, journal={Current Oncology}, volume={28}, number={6}, pages={4972--4985}, year={2021}, publisher={MDPI}, doi={10.3390/curroncol28060417} }

@article{cancers13133221, title={An Insight into Pathophysiological Features and Therapeutic Advances on Ependymoma}, author={Seo, Seung-Hee and Paul, Shamrat Kumar and Shikder, Mita and Khanam, Mushira and Ghosh, Popy and Hasib, Tasnin Al and Ahmed, Kazi Ahsan and Sikdar, Suranjana and Uddin, Md Jamal and Kwon, Youngjoo}, journal={Cancers}, volume={13}, number={13}, pages={3221}, year={2021}, publisher={MDPI}, doi={10.3390/cancers13133221} }

@inproceedings{paul2019silico, title={In Silico Design and Homology Modeling of Helicase C-Terminal Domain of Nonstructural Protein NS3 of West Nile Virus (Strain NY-99)}, author={Paul, Shamrat Kumar and Khalipha, Abul Bashar Ripon and Kabir, Lutful and Ray, Pranta and Mina, Masuma Akter and Masum, Hossain Mohammad}, booktitle={International Conference on Communication, Devices and Computing}, pages={723--732}, year={2019}, organization={Springer} }

@incollection{paul2019structure, title={Structure prediction and functional characterization of uncharacterized protein Rv1708 of Mycobacterium tuberculosis (Strain ATCC 25618/H37Rv)}, author={Paul, Shamrat Kumar and Al Hasib, Tasnin and Ray, Pranta and Kabir, Lutful and Khalipha, Abul Bashar Ripon}, booktitle={Biotechnology and Biological Sciences}, pages={179--184}, year={2019}, publisher={CRC Press} }